Skinny Pumpkin Quinoa Muffins are a delightful and healthy treat that you can enjoy any time of the day. These muffins are perfect for breakfast on the go or as a mid-afternoon snack. With the warm, comforting flavors of pumpkin and spices, they bring a touch of fall to your kitchen year-round. Plus, they are packed with nutritious ingredients like quinoa and oats, making them not only tasty but also filling and satisfying.
Why You’ll Love This Recipe
- Healthy Ingredients: Made with whole food ingredients, these muffins are both nutritious and delicious.
- Easy to Prepare: With simple steps and minimal prep time, you can whip these muffins up in no time.
- Versatile Snack: Enjoy them for breakfast, as a snack, or even as a dessert—these muffins fit any occasion.
- Freezer Friendly: Make a batch ahead of time and freeze for quick breakfasts later in the week.
- Great Flavor: The combination of pumpkin and spices creates a rich flavor profile that everyone will love.
Tools and Preparation
Before you start baking your Skinny Pumpkin Quinoa Muffins, gather your tools. Having everything ready will make the process smoother and more enjoyable.
Essential Tools and Equipment
- Muffin tin
- Mixing bowls
- Whisk
- Measuring cups
- Blender (for oat flour)
- Rubber spatula
Importance of Each Tool
- Muffin tin: Essential for shaping your muffins perfectly; ensures even baking.
- Mixing bowls: Allows you to mix dry and wet ingredients separately for better texture.
- Blender: Necessary if you’re grinding oats into flour, ensuring fresh oat flour for the recipe.

Ingredients
To make your Skinny Pumpkin Quinoa Muffins, gather the following ingredients:
Wet Ingredients
- 1 tablespoon flaxseed meal
- 3 tablespoons water
- 1/2 cup mashed banana (1 large, 2 small)
- 3/4 cup pumpkin puree
- 1/4 cup non-dairy milk
- 1/4 cup maple syrup
Dry Ingredients
- 1 1/4 cup oat flour (oats ground in a blender)
- 1/2 cup quinoa flakes
- 1/2 cup blanched almond flour
- 1/4 cup coconut sugar
- 2 teaspoons baking powder
- 1 teaspoon cinnamon
- 1/2 teaspoon vanilla bean powder (or 1 teaspoon extract)
- 1/2 teaspoon nutmeg
- 1/4 teaspoon ginger
- 1/4 teaspoon salt
How to Make Skinny Pumpkin Quinoa Muffins
Step 1: Preheat the Oven
Preheat your oven to 350ºF. Grease a 12-cup muffin tin with cooking spray or oil to prevent sticking.
Step 2: Prepare Flax Egg
Combine the flaxseed meal with water in a small bowl. Let it sit for about 5 minutes until it thickens into a gel-like consistency.
Step 3: Mix Dry Ingredients
In a large mixing bowl, whisk together all dry ingredients including oat flour, quinoa flakes, almond flour, coconut sugar, baking powder, cinnamon, nutmeg, ginger, and salt.
Step 4: Combine Wet Ingredients
In another bowl, beat together mashed banana, pumpkin puree, non-dairy milk, and maple syrup. Add in the prepared flax egg and mix until well combined.
Step 5: Combine Mixtures
Pour the wet mixture into the dry ingredients. Stir gently until just combined; be careful not to overmix—the batter should be thick but stirrable.
Step 6: Fill Muffin Cups
Scoop the batter into each muffin cup until they are about three-quarters full. If there are any unused cups in your muffin tin, fill them with water to help with even baking. Optionally sprinkle tops with pumpkin seeds or quinoa flakes.
Step 7: Bake Muffins
Place the muffin tin on the center rack of your preheated oven. Bake for 23-25 minutes or until a cake tester inserted into the center comes out clean.
Step 8: Cool Down
Allow muffins to cool in the pan for about 5 minutes before transferring them to a wire rack to cool completely. If desired, reheat in a toaster oven or microwave before serving.
Enjoy these delicious Skinny Pumpkin Quinoa Muffins as part of your healthy eating routine!
How to Serve Skinny Pumpkin Quinoa Muffins
Skinny Pumpkin Quinoa Muffins are versatile and can be enjoyed in various ways. Whether you’re having them for breakfast, a snack, or dessert, these muffins can be paired with different toppings or sides to enhance their flavor.
With Nut Butter
- Spread almond or peanut butter on top for added protein and richness.
With Yogurt
- Serve the muffins alongside coconut yogurt for a creamy texture that complements the pumpkin flavor.
With Fresh Fruit
- Pair with sliced bananas or apples to add natural sweetness and freshness.
With Maple Syrup Drizzle
- A light drizzle of maple syrup can elevate the sweetness, making it a delightful treat.
With Coffee or Tea
- Enjoy your muffins with a warm cup of coffee or herbal tea for a cozy experience.
How to Perfect Skinny Pumpkin Quinoa Muffins
To ensure your Skinny Pumpkin Quinoa Muffins turn out perfectly every time, consider these helpful tips.
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Use fresh ingredients: Make sure your pumpkin puree and spices are fresh for the best flavor.
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Don’t overmix: Stir just until combined; overmixing can make the muffins dense.
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Check doneness: Use a toothpick to check if they are done. It should come out clean from the center.
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Let them cool: Allow the muffins to cool completely before storing to maintain their moisture and texture.
Best Side Dishes for Skinny Pumpkin Quinoa Muffins
Pairing side dishes with your Skinny Pumpkin Quinoa Muffins can enhance your meal. Here are some great options to consider:
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Fruit Salad: A refreshing mix of seasonal fruits adds vitamins and balances the muffin’s sweetness.
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Chia Seed Pudding: This creamy pudding made with almond milk is nutritious and pairs well with the flavors of pumpkin.
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Granola: Crunchy granola provides a delightful contrast in texture and can be sprinkled on top for added crunch.
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Smoothie Bowl: A thick smoothie topped with seeds and nuts complements the muffins while keeping breakfast light.
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Avocado Toast: The creaminess of avocado toast creates a savory balance alongside the sweet muffins.
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Coconut Whipped Cream: For those who enjoy a dessert-like experience, this fluffy topping adds richness without dairy.
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Tea-infused Oatmeal: A warm bowl of oatmeal brewed with cinnamon and nutmeg enhances the fall flavors of your muffins.
Common Mistakes to Avoid
Making Skinny Pumpkin Quinoa Muffins can be a fun and rewarding experience, but there are some common mistakes to watch out for.
- Bold Measurement Errors: Using incorrect measurements can lead to dense or dry muffins. Always use measuring cups and spoons specifically designed for dry and liquid ingredients.
- Bold Skipping the Flax Egg: The flaxseed meal combined with water acts as a binding agent. If you skip this step, your muffins may fall apart. Remember to let it sit until it gels.
- Bold Overmixing the Batter: Overmixing can make muffins tough. Mix just until combined for a light, fluffy texture.
- Bold Not Preheating the Oven: Baking in an improperly heated oven can affect the rise of your muffins. Always preheat your oven to 350ºF before baking.
- Bold Ignoring Baking Time: Every oven is different, so check your muffins a few minutes before the recommended baking time. Insert a cake tester; if it comes out clean, they’re done!

Storage & Reheating Instructions
Refrigerator Storage
- Store muffins in an airtight container.
- They will stay fresh for up to 5 days in the refrigerator.
Freezing Skinny Pumpkin Quinoa Muffins
- Wrap each muffin individually in plastic wrap or aluminum foil.
- Place wrapped muffins in a freezer-safe bag or container; they can last up to 3 months.
Reheating Skinny Pumpkin Quinoa Muffins
- Bold Oven: Preheat your oven to 350ºF and heat for about 10 minutes for a freshly baked taste.
- Bold Microwave: Heat one muffin on high for about 20-30 seconds, checking to avoid overheating.
- Bold Stovetop: Place on a skillet over low heat for a few minutes until warmed through.
Frequently Asked Questions
Here are some common questions about making Skinny Pumpkin Quinoa Muffins.
Can I use other sweeteners instead of maple syrup?
Yes! You can substitute honey or agave syrup for maple syrup depending on your preference.
How do I know when my muffins are done?
Insert a cake tester into the center. If it comes out clean, your muffins are ready!
Can I make these muffins gluten-free?
Absolutely! Just ensure that the oat flour and quinoa flakes you use are certified gluten-free.
What variations can I try with Skinny Pumpkin Quinoa Muffins?
You can add chocolate chips, nuts, or dried fruits for added flavor and texture.
Are these muffins suitable for meal prep?
Yes! These muffins are great for meal prep and can be stored in both the fridge and freezer.
Final Thoughts
These Skinny Pumpkin Quinoa Muffins are not only delicious but also versatile, making them perfect for breakfast or as a snack. Feel free to customize them with your favorite mix-ins like nuts or chocolate chips. Give this recipe a try; you won’t be disappointed!

Skinny Pumpkin Quinoa Muffins
- Total Time: 35 minutes
- Yield: Serves 12 muffins 1x
Description
Indulge in the delightful taste of Skinny Pumpkin Quinoa Muffins, a wholesome treat perfect for any time of day. Bursting with the comforting flavors of pumpkin and aromatic spices, these muffins are not only delicious but also packed with nutritious ingredients like quinoa and oats. Ideal for breakfast on the go or as a satisfying snack, they bring a touch of fall to your kitchen year-round. Plus, their simple preparation makes them an excellent choice for meal prep or a healthy dessert option. These muffins are freezer-friendly too, ensuring you have a quick, healthy option whenever cravings strike!
Ingredients
- 1 tablespoon flaxseed meal
- 3 tablespoons water
- 1/2 cup mashed banana
- 3/4 cup pumpkin puree
- 1/4 cup non-dairy milk
- 1/4 cup maple syrup
- 1 1/4 cup oat flour
- 1/2 cup quinoa flakes
- 1/2 cup blanched almond flour
- 1/4 cup coconut sugar
- 2 teaspoons baking powder
- 1 teaspoon cinnamon
- 1/2 teaspoon nutmeg
- 1/4 teaspoon ginger
- 1/4 teaspoon salt
Instructions
- Preheat your oven to 350ºF and grease a muffin tin.
- Prepare the flax egg by mixing flaxseed meal and water; let sit until thickened.
- In a bowl, combine all dry ingredients: oat flour, quinoa flakes, almond flour, coconut sugar, baking powder, spices, and salt.
- In another bowl, mix wet ingredients: mashed banana, pumpkin puree, non-dairy milk, maple syrup, and the prepared flax egg.
- Combine wet and dry mixtures gently until just combined.
- Fill muffin cups about three-quarters full and bake for 23-25 minutes or until a toothpick inserted comes out clean.
- Cool muffins in the pan briefly before transferring to a wire rack.
- Prep Time: 10 minutes
- Cook Time: 25 minutes
- Category: Dessert
- Method: Baking
- Cuisine: American
Nutrition
- Serving Size: 1 muffin
- Calories: 130
- Sugar: 8g
- Sodium: 95mg
- Fat: 5g
- Saturated Fat: 0.5g
- Unsaturated Fat: 4g
- Trans Fat: 0g
- Carbohydrates: 18g
- Fiber: 3g
- Protein: 3g
- Cholesterol: 0mg